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Python in Biology and Genomics

Episode #154, published Wed, Mar 7, 2018, recorded Fri, Feb 9, 2018.

This episode is carbon neutral.
Python is often used in big-data situations. One of the more personal sources of large data sets is our own genetic code. Of course, as Python grows stronger in data science, it's finding its place in biology and genetics.

In this episode, you'll meet Ian Maurer. He's working to help make cancer a think of the past. We'll dig into how Python is part of that journey.

Links from the show

Ian on Twitter: @imaurer
Genomoncology: genomoncology.com
Genomoncology on GitHub: github.com/genomoncology
My Cancer Genome: mycancergenome.org
Google's Deep Variant: github.com/google/deepvariant

Background Reading
What are computers used for in DNA sequencing?: biology.stackexchange.com
An introduction to Next-Generation Sequencing Technology: illumina.com
Difference between fasta fastq and sam file formats: bioinformatics.stackexchange.com
One Renegade Cell Book: amazon.com
BioStars, Bioinformatics explained: biostars.org

Codacy: codacy.com
Talk Python Training: training.talkpython.fm
Episode transcripts: talkpython.fm

Stay in touch with us
Subscribe on YouTube (for live streams): youtube.com
Follow Talk Python on Twitter: @talkpython
Follow Michael on Twitter: @mkennedy

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Ian Maurer
Ian Maurer
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